g. the review by Fennel et al. 2008),
current Baltic Sea biogeochemical models mainly use bulk formulations to describe nutrient fluxes at the sediment-water interface. To capture the denitrification dynamics Ku-0059436 in vitro in the Gulf of Riga, where sediments can be subject to both temporal hypoxia as well as high nitrate concentrations, a model parameterisation is needed that takes into account the fact that the nitrate required for denitrification is either derived from the nitrification of mineralised ammonium within the sediments by coupled nitrification – denitrification (Vanderborght et al. 1977, Jenkins & Kemp 1984) or is provided by diffusion from the overlying water column (Vanderborght & Billen 1975). In the current study, therefore, we have not only assessed the potential consequences of hypoxia on the biogeochemical cycle in the Gulf of Riga by studying nutrient flux dynamics LDK378 chemical structure under various oxygen conditions; we have also used the experimental results to adjust the representation of sediment-water fluxes of nitrogen and phosphorus in a biogeochemical model of the Gulf of Riga. The Gulf of Riga is a semi-enclosed sub-basin of the Baltic Sea with maximum and mean depths of 62 and 20 m respectively (Yurkovskis et al. 1993). Water exchange with the Baltic Sea occurs
through the Irbe Strait in the north-west and the Suur Strait in the north, which are both sufficiently shallow to restrict the water exchange to the low saline surface water of the Baltic Proper. The surface water circulation in the Gulf is predominantly oriented anticlockwise (Reigstad et al. 1999). Freshwater is supplied mainly by the major rivers entering the southern and eastern parts of Miconazole the Gulf (Tamminen & Seppälä 1999). The bottom sediments in the Gulf of Riga are dominated by fine material (< 0.01 mm) at depths exceeding 27 m. Its main sediment accumulation zone is located at depths > 40 m, so accumulation bottoms are found mostly in the southern and south-western parts of the Gulf (Carman et al. 1996). The current study was carried
out in a sediment accumulation area in the southern Gulf of Riga, at monitoring station 119 (depth 42 m; 57°18′N; 23°51′E) (Figure 1). The total carbon and total nitrogen concentrations in the surface sediments in this area are 5.1 and 0.5 mmol g−1 dry weight respectively. Considerable seasonal variations of temperature and oxygen concentration are characteristic of the near-bottom water of the Gulf of Riga. During autumn and winter the water column is well mixed (Berzinsh 1980, Omstedt & Axell 2003). Vertical temperature gradients begin to develop during spring and the water column remains thermally stratified throughout summer and early autumn. As a result, near-bottom oxygen concentrations in the central part of the Gulf generally increase until the onset of thermal stratification in spring as a function of temperature- controlled solubility.